Αr14 RNA - meaning and definition. What is Αr14 RNA
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What (who) is Αr14 RNA - definition


Αr14 RNA         
  •  doi = 10.1186/1471-2105-9-474 }}</ref> The color scheme represent the base pair probabilities.
  • Figure 3: Phylogenetic distribution of known and predicted αr14 genes. Gene numbers are based on computational analysis using the program Infernal. Shadowed in red are the closer homologs with high Infernal E-values and bit scores. Legend: αr14_Smr14C2 = Sinorhizobium meliloti 1021 (NC_003047) (NC_010994), αr14_Smr14C3 = Sinorhizobium meliloti 1021 (NC_003047) (NC_011985), αr14_Smedr14C1 = Sinorhizobium medicae WSM419 chromosome (NC_009636) (NC_011983), αr14_Smedr14C2 = Sinorhizobium medicae WSM419 chromosome (NC_009636) (NC_011369), αr14_ReCIATr14C3 = Rhizobium etli CIAT 652 (NC_010994) (NC_012850), αr14_Atr14C2 = Agrobacterium tumefaciens str. C58 chromosome linear (NC_003063) (NC_007761), αr14_Rlt1325r14C2 = Rhizobium leguminosarum bv. trifolii WSM1325 (NC_012850) (NC_012441), αr14_ReCFNr14C2 = Rhizobium etli CFN 42 (NC_007761) (NC_010994), αr14_Rlt2304r14C2 = Rhizobium leguminosarum bv. trifolii WSM2304 chromosome (NC_011369) (NC_011985), αr14_AH13r14C1 = Agrobacterium sp. H13-3 chromosome (NC_015183) (NC_011983), αr14_Sfr14C2 = Sinorhizobium fredii NGR234 chromosome (NC_012587) (NC_011369), αr14_Sfr14C1 = Sinorhizobium fredii NGR234 chromosome (NC_012587) (NC_012850), αr14_Rlt2304r14C1 = Rhizobium leguminosarum bv. trifolii WSM2304 chromosome (NC_011369) (NC_007761), αr14_Atr14C1 = Agrobacterium tumefaciens str. C58 chromosome circular (NC_003062) (NC_012441), αr14_ReCIATr14C1 = Rhizobium etli CIAT 652 (NC_010994) (NC_010994), αr14_Rlvr14C1 = Rhizobium leguminosarum bv. viciae 3841 (NC_008380) (NC_011985), αr14_ReCFNr14C1 = Rhizobium etli CFN 42 (NC_007761) (NC_011983), αr14_Avr14CI1 = Agrobacterium vitis S4 chromosome 1 chromosome 1 (NC_011989) (NC_011369), αr14_Arr14CI2 = Agrobacterium radiobacter K84 chromosome 1 (NC_011985) (NC_012850), αr14_ReCIATr14C4 = Rhizobium etli CIAT 652 (NC_010994) (NC_007761), αr14_Rlt1325r14C1 = Rhizobium leguminosarum bv. trifolii WSM1325 (NC_012850) (NC_012441), αr14_Avr14CI2 = Agrobacterium vitis S4 chromosome 1 chromosome 1 (NC_011989) (NC_010994), αr14_Sfr14b = Sinorhizobium fredii NGR234 plasmid pNGR234b (NC_012586) (NC_011985), αr14_Arr14CI3 = Agrobacterium radiobacter K84 chromosome 1 (NC_011985) (NC_011983), αr14_ReCFNr14C3 = Rhizobium etli CFN 42 (NC_007761) (NC_011369), αr14_Rlt1325r14C3 = Rhizobium leguminosarum bv. trifolii WSM1325 (NC_012850) (NC_012850), αr14_Rlvr14C3 = Rhizobium leguminosarum bv. viciae 3841 (NC_008380) (NC_007761), αr14_Rlt2304r14C3 = Rhizobium leguminosarum bv. trifolii WSM2304 chromosome (NC_011369) (NC_012441), αr14_Arr14Atc = Agrobacterium radiobacter K84 plasmid pAtK84c (NC_011987) (NC_010994), αr14_Arr14CII1 = Agrobacterium radiobacter K84 chromosome 2 (NC_011983) (NC_011985), αr14_Smr14B = Sinorhizobium meliloti 1021 plasmid pSymB (NC_003078) (NC_011983), αr14_Avr14CII1 = Agrobacterium vitis S4 chromosome 2 (NC_011988) (NC_011369), αr14_Smedr14p01 = Sinorhizobium medicae WSM419 plasmid pSMED01 (NC_009620) (NC_012850), αr14_Rlt1325r14p05 = Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132505 (NC_012854) (NC_007761), αr14_Rlt1325r14p02 = Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132502(NC_012858) (NC_012441), αr14_Smedr14p022 = Sinorhizobium medicae WSM419 plasmid pSMED02 (NC_009621) (NC_010994), αr14_Rlvr14p11 = Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11 (NC_008384) (NC_011985), αr14_Arr14CII2 = Agrobacterium radiobacter K84 chromosome 2 (NC_011983) (NC_011983), αr14_Arr14CI1 = Agrobacterium radiobacter K84 chromosome 1 (NC_011985) (NC_011369), αr14_ReCFNr14e = Rhizobium etli CFN 42 plasmid p42e (NC_007765) (NC_012850), αr14_Rlt1325r14p012 = Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501 (NC_012848) (NC_007761), αr14_Rlt2304r14p02 = Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pR132501 (NC_011366) (NC_012441), αr14_Rlt2304r14p012 = Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pR132501 (NC_011368) (NC_010994), αr14_Rlt1325r14p04 = Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132504 (NC_012852) (NC_011985), αr14_Avr14CI3 = Agrobacterium vitis S4 chromosome 1 (NC_011989) (NC_011983), αr14_ReCIATr14A = Rhizobium etli CIAT 652 plasmid pA (NC_010998) (NC_011369), αr14_MsBCNr14C1 = Mesorhizobium sp. BNC1 (NC_008254) (NC_012850), αr14_Avr14CII2 = Agrobacterium vitis S4 chromosome 2 (NC_011988) (NC_007761), αr14_Avr14Atc = Agrobacterium vitis S4 plasmid pAtS4c (NC_011984) (NC_012441), αr14_ReCIATr14C2 = Rhizobium etli CIAT 652 (NC_010994) (NC_010994), αr14_Atr14C3 = Agrobacterium tumefaciens str. C58 chromosome linear (NC_003063) (NC_011985), αr14_ReCIATr14B = Rhizobium etli CIAT 652 plasmid pB (NC_010996) (NC_011983), αr14_ReCFNr14d = Rhizobium etli CFN 42 symbiotic plasmid p42d (NC_004041) (NC_011369), αr14_Sfr14C3 = Sinorhizobium fredii NGR234 chromosome (NC_012587) (NC_012850), αr14_Smedr14C3 = Sinorhizobium medicae WSM419 chromosome (NC_009636) (NC_007761), αr14_Smr14C1 = Sinorhizobium meliloti 1021 (NC_003047) (NC_012441), αr14_Mlr14C1 = Mesorhizobium loti MAFF303099 chromosome (NC_002678) (NC_010994), αr14_Mlr14C2 = Mesorhizobium loti MAFF303099 chromosome (NC_002678) (NC_011985), αr14_Smr14A1 = Sinorhizobium meliloti 1021 plasmid pSymA (NC_003037) (NC_011983), αr14_Rlvr14p12 = Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12 (NC_008378) (NC_011369), αr14_Mcr14C1 = Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome (NC_014923) (NC_012850), αr14_Mcr14C2 = Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome (NC_014923) (NC_007761), αr14_Oar14CI1 = Brucella anthropi ATCC 49188 chromosome 1 (NC_009667) (NC_012441), αr14_Oar14CII1 = Brucella anthropi ATCC 49188 chromosome 2 (NC_009668) (NC_010994), αr14_Smr14A2 = Sinorhizobium meliloti 1021 plasmid pSymA (NC_003037) (NC_011985), αr14_Oar14CI2 = Brucella anthropi ATCC 49188 chromosome 1 (NC_009667) (NC_011983), αr14_Rlt1325r14p011 = Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501 (NC_012848) (NC_011369), αr14_MsBCNr14C2 = Mesorhizobium sp. BNC1 (NC_008254) (NC_012850), αr14_Bs23445r14CI1 = Brucella suis ATCC 23445 chromosome I (NC_010169) (NC_007761), αr14_Bmir14CI1 = Brucella microti CCM 4915 chromosome I (NC_013119) (NC_012441), αr14_Bor14CI1 = Brucella ovis ATCC 25840 chromosome I (NC_009505) (NC_010994), αr14_Bcr14CI1 = Brucella canis ATCC 23365 chromosome I (NC_010103) (NC_011985), αr14_Bm23457r14CI1 = Brucella melitensis ATCC 23457 chromosome I (NC_012441) (NC_011983), αr14_BaS19r14CI1 = Brucella abortus S19 chromosome I (NC_010742) (NC_011369), αr14_Ba19941r14CI1 = Brucella abortus bv. 1 str. 9-941 chromosome I (NC_006932) (NC_012850), αr14_Bmar14CI1 = Brucella melitensis biovar Abortus 2308 chromosome I (NC_007618) (NC_007761), αr14_Bs1330r14CI1 = Brucella suis 1330 chromosome I (NC_004310) (NC_012441), αr14_Smedr14p021 = Sinorhizobium medicae WSM419 plasmid pSMED02 (NC_009621) (NC_010994), αr14_ReCFNr14f = Rhizobium etli CFN 42 plasmid p42f (NC_007766) (NC_011985), αr14_Oar14CII2 = Brucella anthropi ATCC 49188 chromosome 2 (NC_009668) (NC_011983), αr14_Rlt2304r14p011 = Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201 (NC_011368) (NC_011369), αr14_Mcr14p01 = Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome I (NC_014918) (NC_012850), αr14_Mcr14CI4 = Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome I (NC_014923) (NC_007761), αr14_Mcr14CI5 = Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome I (NC_014923) (NC_012441), αr14_Bor14CI2 = Brucella ovis ATCC 25840 chromosome I (NC_009505) (NC_010994), αr14_Bcr14CI2 = Brucella canis ATCC 23365 chromosome I (NC_010103) (NC_011985), αr14_Bs23445r14CI2 = Brucella suis ATCC 23445 chromosome I (NC_010169) (NC_011983), αr14_Bmir14CI2 = Brucella microti CCM 4915 chromosome 1 (NC_013119) (NC_011369), αr14_Bs1330r14CI2 = Brucella suis 1330 chromosome I (NC_004310) (NC_012850), αr14_Mlr14C5 = Mesorhizobium loti MAFF303099 chromosome (NC_002678) (NC_007761), αr14_Bm16Mr14CI1 = Brucella melitensis bv. 1 str. 16M chromosome (NC_003317) (NC_012441), αr14_BaS19r14CI2 = Brucella abortus S19 chromosome 1 (NC_010742) (NC_010994), αr14_Bm23457r14CI2 = Brucella melitensis ATCC 23457 chromosome I (NC_012441) (NC_011985), αr14_Ba19941r14CI2 = Brucella abortus bv. 1 str. 9-941 chromosome I (NC_006932) (NC_011983), αr14_Bmar14CI2 = Brucella melitensis biovar Abortus 2308 chromosome I (NC_007618) (NC_011369), αr14_MsBCNr14p1 = Mesorhizobium sp. BNC1 plasmid 1 (NC_008242) (NC_012850), αr14_Mlr14C4 = Mesorhizobium loti MAFF303099 chromosome (NC_002678) (NC_007761), αr14_Rlvr14C2 = Rhizobium leguminosarum bv. viciae 3841 (NC_008380) (NC_012441).
  • Figure 5: Graphic representation of the αr14 seed members' promoter region. All members presented putative σ70 promoters with -30 and -10 boxes marked in green and red respectively.
  • Figure 6: Graphic representation of the αr14 further related members' promoter region.
αr14 is a family of bacterial small non-coding RNAs with representatives in a broad group of α-proteobacteria. The first member of this family (Smr14C2) was found in a Sinorhizobium meliloti 1021 locus located in the chromosome (C).
Antisense RNA         
RNA MOLECULES HYBRIDIZING TO COMPLEMENTARY SEQUENCES IN EITHER RNA OR DAN, ALTERING THE FUNCTION OF THE LATTER
Rna, antisense; Antisense rna; Antisense mRNA; Anti-sense RNA; AsRNA; Antisense gene
Antisense RNA (asRNA), also referred to as antisense transcript, natural antisense transcript (NAT) or antisense oligonucleotide, is a single stranded RNA that is complementary to a protein coding messenger RNA (mRNA) with which it hybridizes, and thereby blocks its translation into protein. asRNAs (which occur naturally) have been found in both prokaryotes and eukaryotes, and can be classified into short (200 nucleotides) non-coding RNAs (ncRNAs).
RNA editing         
  • The effect of C-to-U RNA editing on the human ApoB gene
  • The Editosome Complex
  • Summary of the Various Functions of RNA Editing
COVALENT ALTERATION OF ONE OR MORE NUCLEOTIDES WITHIN AN RNA MOLECULE TO PRODUCE AN RNA MOLECULE WITH A SEQUENCE THAT DIFFERS FROM THAT CODED GENETICALLY
RNA Editing; Rna editing; Editosome; RNA modification
RNA editing (also RNA modification) is a molecular process through which some cells can make discrete changes to specific nucleotide sequences within an RNA molecule after it has been generated by RNA polymerase. It occurs in all living organisms and is one of the most evolutionarily conserved properties of RNAs.