The Juba Valley Alliance (JVA; Somali: Isbahaysiga Dooxada Jubba) is a political faction of the Somali Civil War. It was the primary opponent of the Somali Patriotic Movement (SPM) and the Somali Reconciliation and Restoration Council (SRRC) vying for the control of Kismayo and the Juba River valley, the area known as Jubaland.

Following the breakdown of central authority in the Somali Civil War, General Hersi "Morgan" declared Jubaland independent on September 3, 1998.

Opponents to General "Morgan" came from the Somali Marehan, Ogadeni and Warsangeli ethnic groups. The Marehan Somali National Front (SNF) and other tribal allies grouped together as the Allied Somali Forces (ASF). They ousted General "Morgan" from Kismayu in June 1999.

The ASF administration renamed itself the Juba Valley Alliance in June 2001, and threw its support behind the Transitional Federal Government (TFG). The leader of the JVA is Colonel Barre Adan Shire Hiiraale, who later became Defense Minister for the TFG. The militia commander of the JVA is Col. Abdulahi Sheik Ismael Fara-Tag.

On June 18, 2001, an 11-member interclan council decided to ally the JVA with the newly establishing Transitional Federal Government.

On August 6, 2001, after 10 days of heavy fighting in a battle involving 40 technicals and 1,000 militiamen, the JVA took the town of Jilib from the SRRC.

In 2002, the JVA battled with the Somali Reconciliation and Restoration Council (SRRC), which opposed the TFG, resulting in 6,000 refugees fleeing Bulo Hawa. In 2003, there were 15,000 internally displaced persons (IDPs) accommodated in Kismayo. Fighting throughout southern and central Somalia resulted in 86,000 IDPs by 2004. Landmines were cited as a problem affecting the area due to the fighting between the JVA and SRRC.